Public Data
3 samples
An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [RNA-Seq]
Accession: SRP008225
Published: 2011 in Cell
cell line
control, sirna
blood
Sezary syndrome
Public Data
1 sample
Genomic analyses of the RNA binding protein Hu Antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites
Accession: SRP008069
Published: 2011 in J Biol Chem
cell line
uterine cervix
cervical cancer
Public Data
3 samples
ChimeraScan: A tool for identifying chimeric transcription in sequencing data
Accession: SRP006719
Published: 2011
cell line
breast, prostate gland
breast cancer, prostate cancer
Public Data
9 samples
Integrative Annotation of Human Large Intergenic Non-Coding RNAs Reveals Global Properties and Specific Subclasses
Accession: SRP007494
Published: 2011 in Genes Dev
cell line, primary cells, ...
brain, liver, ...
cervical cancer
Public Data
4 samples
Determination of transcript abundance before and after serum induction in human HCT-116 colon cancer cell line.
Accession: SRP007506
Published: 2011 in Genes Dev
cell line
compound, control
colon
malignant colon neoplasm
Public Data
6 samples
Transcriptomic analysis of autistic brain reveals convergent molecular pathology [high-throughput sequence data]
Accession: SRP007483
Published: 2011 in Nature
primary tissue
control
anterior transverse temporal area 41, temporal cortex, ...
autism
Public Data
2 samples
An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype.
Accession: SRP007403
Published: 2011 in PLoS Genet
cell line
compound, overexpression, ...
breast
breast cancer
Public Data
3 samples
Regulation of nucleosome landscape and transcription factor binding at enhancers by BRG1
Accession: SRP005281
Published: 2011
primary cells
control, shrna
blood
Public Data
11 samples
Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq
Accession: SRP007359
Published: 2011 in Genome Res
primary tissue
brain, kidney, ...
Public Data
8 samples
mRNA-seq of Human Airway Epithelial Cells
Accession: SRP006676
Published: 2011 in Cancer Prev Res (Phila)
primary cells
control, other
epithelium of bronchus
lung cancer
Public Data
4 samples
RNA-seq of two paired normal and cancer tissues in two stage III colorectal cancer patients
Accession: SRP006900
Published: 2011
primary tissue
intestine
colorectal cancer
Public Data
3 samples
Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]
Accession: SRP005967
Published: 2011 in Nature
cell line
compound, control, ...
prostate gland
prostate cancer
Public Data
10 samples
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (mRNA-seq)
Accession: SRP006475
Published: 2011 in Nat Methods
cell line
compound, compound, ...
kidney
Public Data
30 samples
Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
Accession: SRP002628
Published: 2011
primary tissue
prostate gland
prostate cancer
Public Data
10 samples
A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes: RNA-Seq Comparison
Accession: SRP005242
Published: 2011 in PLoS One
cell line
compound, control
prostate gland
prostate cancer